The new version of Modeller, 9.11, is now available for download! Please
see the download page at http://salilab.org/modeller/ for more information.
If you have a license key for Modeller 8 or 9, there is no need to
reregister for Modeller 9.11 - the same license key will work. (It won't
do any harm to reregister if you want to, though!)
9.11 is primarily a bugfix release relative to the last public release
(9.10). Major user-visible changes include:
# Alpha (Tru64), Itanium (ia64) and Sun Solaris binaries are no longer
provided. If you wish to use Modeller on one of these machines,
please use the older 9.10 version.
# sequence_db objects now only store part of the sequence database in
memory when using a binary (HDF5) file (databases in PIR or FASTA
format still must be read in in their entirety). Functions that use
sequence databases now take a window_size argument, that controls how
much of the database is read into memory at one time. This results in
much lower memory usage when using large databases such as UniProt.
# SSBOND and CONECT records are now written to PDB files when models
containing disulfides are saved.
# The default behavior of automatically converting common modified
residues (MSE, MEX, ABU) to their standard equivalents can now be
disabled by setting env.io.convert_modres=False.
See the Modeller manual for a full change log:
http://salilab.org/modeller/9.11/manual/node39.html
If you encounter bugs in Modeller 9.11, please see
http://salilab.org/modeller/9.11/manual/node10.html for information on
how to report them.
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