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Re: [modeller_usage] How to get specified residue modelling

On 4/26/13 2:17 AM, Anogna wrote:

I have been struggling from past one week with the following kind of
modelling....

I have a target sequence which is 97% identity with two PDB's (named A
and B)
I just want to make A as main template, but A has some residues missing,
so i thought of making B as template for those missing residues in the
"PDB A".

But to go with this I am not able to get a python script file in which i
can specify build residues.
This sounds straightforward. You wouldn't do anything special in the Python script, but you would craft an alignment to use the B template only in the regions where A is deficient. See questions 1 and 2 in the FAQ: 
http://salilab.org/modeller/9.11/FAQ.html

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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