Re: [modeller_usage] Build missing residues for multisubunit protein

[Modeller Caretaker <>]

On 07/29/2013 12:02 PM, Kelly Tran wrote:
> The error I receive is:
>
> ---
>    File "/Library/modeller-9.10/modlib/modeller/coordinates.py", line
> 298, in _indxres
>      raise KeyError("No such residue: %s" % indx)
> KeyError: 'No such residue: 1:B'
> ---
>
> I separate the chains with '/' in my alignment file.

See http://salilab.org/modeller/9.12/manual/node29.html

Modeller numbers residues in the entire protein starting at 1 by 
default; it doesn't reset the numbering to 1 when it starts a new chain.

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage