On 10/14/13 7:55 AM, fantasticqhl wrote:
I am trying to construct a model with two chains, the conformation of the template is extended helix, However, the conformations of the model I got were folded, the C-terminal is very close to the N-terminal.
This suggests that your alignment is incorrect. Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage