[modeller_usage] Protein specified in ALIGN_CODES was not found in the alignment file; ALIGN_CODES< 1> = 1N11

To: <>
Subject: [modeller_usage] Protein specified in ALIGN_CODES was not found in the alignment file; ALIGN_CODES< 1> = 1N11
From: <>
Date: Wed, 30 Oct 2013 17:04:18 +0100

Hello everybody !

I am new to modeller, so please excuse me if my question seems trivial.

I have a problem building a model from multiple templates.

When i try to run build model script I get an error:

"Protein specified in ALIGN_CODES was not found in the alignment file; ALIGN_CODES< 1> = 1N11"

I followed all the previous steps from advanced modeling tutorial and all of them worked fine.

Now I am stuck, and all solutions I`ve tried dont work.

I attatch my script and alignment file.

Thank you for your help in advance !

Attachment: script and alignment.zip
Description: Zip compressed data

Follow-Ups:
- Re: [modeller_usage] Protein specified in ALIGN_CODES was not found in the alignment file; ALIGN_CODES< 1> = 1N11
 - From: Robert Campbell <>

[modeller_usage] Protein specified in ALIGN_CODES<i> was not found in the alignment file; ALIGN_CODES< 1> = 1N11