[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] Fwd: Extract Chain ID

On 10/28/13 12:56 PM, Amjad Farooq wrote:

Can you please clarify this for me:

1) I have a multi-chain PDB
2) I have a protein sequence that only matches against one of the chains
in the PDB

So, how do I automatically, say using a python script and my protein
sequence as a query, extract the chain ID of the PDB segment to which it
matches? Is a script like that available in MODELLER?
No - you would need to write your own. But it is really elementary Python - I recommend the tutorial on the Python website. 

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage