Re: [modeller_usage] Exclude residues from modeling
To: Jurgens de Bruin <>,
Subject: Re: [modeller_usage] Exclude residues from modeling
From: Modeller Caretaker <>
Date: Thu, 02 Jan 2014 12:04:48 -0800
On 12/18/2013 03:42 AM, Jurgens de Bruin wrote:
I would like to know what would be the best option to exclude residues
from the N and C terminal of the target. The sequence can be truncated
in the fasta file before modelling I believe would be the easy answer
but does MODDELLER have a option/function that would have this?
If you don't want the residues in the model at all, the only way to do
it in Modeller is to remove them from the modeling alignment. You can
either do this manually, or programatically using something like
alignment.edit(): http://salilab.org/modeller/9.12/manual/node293.html