On 4/8/14, 9:27 AM, flavio seixas wrote:
I have already considered that option. However, generating models aligned with structure A does not make a model identic to structure A. In another words, I do not want to lose the experimental information that structure A brings
In that case, simply select only the loops for refinement: http://salilab.org/modeller/9.13/manual/node23.html Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage