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Re: [modeller_usage] Adding missing residues to PDB with two chains

On 9/29/14, 1:22 PM, Anjela Manandhar wrote:

Hi, I am new to Modeller. Here, I am trying to add missing residues in
my PDB. My PDB has two chains A and B. I checked the tutorial and
mailing lists where they talk about PDB with single chain. So, how can I
get an .ali file for my protein and how should I label the residues to
be inserted.
It is the same but you add a chain break character ('/') between the chains in your alignment file. 
See http://salilab.org/modeller/9.14/manual/node29.html

	Ben Webb, Modeller Caretaker
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             http://www.salilab.org/modeller/
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