Re: [modeller_usage] Using unpublished structures for template to create models?

Hi Geoff,

I wonder if Structuropedia might help:
http://structuropedia.org

It is essentially MODELLER made simple. Give it a try. Just copy and paste your sequence. Simple as that.

With warmest regards,

AMJAD FAROOQ PhD DIC | Associate Professor
Dept of Biochemistry, University of Miami School of Medicine
Location: Gautier Building, Suite 217
Address: 1011 NW 15th Street #217, Miami , FL 33136, USA
Contact: " target="_blank"> | 305-243-2429
Labpage: farooqlab.net | structuropedia.org

On Wed, Dec 10, 2014 at 5:22 PM, Geoffrey Lippa <" target="_blank">> wrote:

Hi all,

I was hoping to get some help on the modeling of a protein target by sequence alignment using a 41% similar structure template I recently solved, in place of a published structure on the PDB. The resolution has changed and may help create a more accurate model for ligand docking. Thanks.

Geoff

Dr. Geoffrey Lippa
Post-doctoral Research Associate
Laboratory of Dr. Andrew Gulick
Hauptman Woodward Medical Research Institute
700 Ellicott St., Buffalo, NY 14203
Phone: 585-690-0850
Email: ">
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