On 12/10/14 2:22 PM, Geoffrey Lippa wrote:
I was hoping to get some help on the modeling of a protein target by sequence alignment using a 41% similar structure template I recently solved, in place of a published structure on the PDB. The resolution has changed and may help create a more accurate model for ligand docking.
You don't have to do anything special to use an unpublished structure as a template. Just save it in PDB format and then proceed normally.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage