On 1/27/16 4:31 AM, Alexey Orlov wrote:
Is there anyway to make 3-10 alpha-helix restraints? I've searched the archives but haven't found anything connected with it.
There's nothing built in to Modeller to do it. But you could certainly manually add some distance restraints (and possibly phi/psi dihedral restraints) to try to encourage your structures to adopt this conformation.
Ben Webb, Modeller Caretaker -- modeller-care@salilab.org https://salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage