Re: [modeller_usage] Optimization of an existing loop model

[Modeller Caretaker <>]

On 1/17/18 8:16 AM, Claire Marks wrote:
> I would like to use MODELLER to optimize some models that I have 
> generated as part of a loop prediction protocol.
...
> This still generates the initial 'straight' conformation that the 
> MODELLER loop modelling algorithm starts from; it doesn't start from the 
> loop conformation in the file I provided.

You can override this behavior by subclassing loopmodel and overriding 
the build_ini_loop() method. See
https://salilab.org/modeller/9.19/manual/node95.html

	Ben Webb, Modeller Caretaker
--
             https://salilab.org/modeller/
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