Re: [modeller_usage] Reordering chains in template structure
To: Ajasja Ljubetič <>,
Subject: Re: [modeller_usage] Reordering chains in template structure
From: Modeller Caretaker <>
Date: Fri, 25 May 2018 15:10:32 -0700
On 5/25/18 2:17 AM, Ajasja Ljubetič wrote:
I have a template of four single chains, however in the target
(single-chain) structure the chain segments are in a different order
...
*Is it possible to somehow specify this correctly in the alignment
file?*
No - your two options are (as you correctly stated) to reorder the input
PDB or to use multiple templates (losing interchain restraints in the
latter case).
That said, it's a little unusual to build a single chain model using a
multi-chain template. What are you trying to do?