Re: [modeller_usage] Could modeller change query position in result pdb file?
To: jb ZHOU <>,
Subject: Re: [modeller_usage] Could modeller change query position in result pdb file?
From: Modeller Caretaker <>
Date: Wed, 20 Feb 2019 09:24:03 -0800
On 2/20/19 6:23 AM, jb ZHOU wrote:
I used Modeller to model a sequence in UniProt (UniProt Accesion:
Q04721), and I only used parts of sequence to model (from 414
to 532), and I want to get the final three-dimensional structures file
(pdb file) which the first amino acid number still start with 414 and
the last amino acid number is 532. But in fact the first amino acid
number in the final pdb file start with 1 (see figure below, GLU's
position is 1, but it is 414 in UniProt,).
I could write a script to map it manually, but it is very
inconvenience, so could modeller (or module in modeller) realize this ?
Of course. Override special_patches() and have it call rename_segments()
to renumber the residues. See