Re: [modeller_usage] Missing Residues Script File Inquiry

[Joel Subach <>]

.. . and Ben I believe I may not need any script files i. e. all I would need is my proteins sequence and 3-D coordinate files if there is any other script file that I would need to create a use please feel free to let me know, thanks Ben: ). (I

ZjQcmQRYFpfptBannerStart

This Message Is From an External Sender

This message came from outside your organization.

 

ZjQcmQRYFpfptBannerEnd

...and Ben I believe I may not need any script files i.e. all I would need is my proteins sequence and 3-D coordinate files

if there is any other script file that I would need to create a use please feel free to let me know, thanks Ben:).  (I had seen

in a youtube Windows tutorial the user using three Python Script files that he did not exhibit hence my inquiry.)

On Sat, Aug 27, 2022 at 8:35 AM Joel Subach <">> wrote:

Hello Ben thank you for your kind update:).

Yes the link that you had emailed is what I am using as my template to fill in my missing residues

but where are the script files for this?  Must I create all of my own?  I completed your first tutorial

where all the script files were given i.e. the below but my understanding is that I would need similar

files to complete my missing residues.  Thanks if you can answer this inquiry since its particular. 🤓

Tutorial

---

Basic example:
Modeling lactate dehydrogenase from Trichomonas vaginalis based on a single template.

.tar.gz format (for Unix/Linux).

On Sat, Aug 27, 2022 at 12:33 AM Modeller Caretaker <" target="_blank">> wrote:

On 8/26/22 12:30 PM, Joel Subach via modeller_usage wrote:
> Hello must I create the script files to fill in missing residues?
> If not where would they be?

There is a demonstration of filling in missing residues in the Modeller
wiki:
https://salilab.org/modeller/wiki/Missing_residues

        Ben Webb, Modeller Caretaker
--
" target="_blank">             https://salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage