On 8/27/22 12:03 PM, Joel Subach via modeller_usage wrote:
I am trying to model missing residues for a heptamer via the below Modeller link, is Modeller able to model these 12-missing residues in each of the seven exterior cytoplasmic loop-regions via a properly formatted alignment.ali file or would modeling just the missing residues for a single monomer work best for Modeller?
Modeller can remodel all chains simultaneously. It may be more efficient to remodel just the monomer though, particularly if you are working with a homoheptamer and the missing loops don't interact with each other.
Ben Webb, Modeller Caretaker -- modeller-care@salilab.org https://salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage