On 8/27/22 12:03 PM, Joel Subach via modeller_usage wrote:
I am trying to model missing residues for a heptamer via the below
Modeller link, is Modeller able to model these 12-missing residues in
each of the seven exterior cytoplasmic loop-regions via a properly
formatted alignment.ali file or would modeling just the missing residues
for a single monomer work best for Modeller?
Modeller can remodel all chains simultaneously. It may be more efficient
to remodel just the monomer though, particularly if you are working with
a homoheptamer and the missing loops don't interact with each other.