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Re: [modeller_usage] Missing Residues Modeling for an Oligomer Inquiry

On 8/27/22 12:03 PM, Joel Subach via modeller_usage wrote:
I am trying to model missing residues for a heptamer via the below
Modeller link, is Modeller able to model these 12-missing residues in
each of the seven exterior cytoplasmic loop-regions via a properly
formatted alignment.ali file or would modeling just the missing residues
for a single monomer work best for Modeller?

Modeller can remodel all chains simultaneously. It may be more efficient to remodel just the monomer though, particularly if you are working with a homoheptamer and the missing loops don't interact with each other.

	Ben Webb, Modeller Caretaker
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage