Creating a threaded protein template?
25 Aug
2018
25 Aug
'18
10:13 a.m.
Hello,
I want to create a threaded template without building the nonaligned region? is it possible using modeller?
How can I modify the code here to do so?
https://salilab.org/modeller/tutorial/basic.html
Regards.
27 Aug
27 Aug
11:06 a.m.
On 8/25/18 10:13 AM, Ahmad Khalifa wrote: > I want to create a threaded template without building the nonaligned > region? is it possible using modeller?
Modeller doesn't create templates - it makes models using templates. If you mean you want to build a model of only the residues that are aligned to a template, then sure, just remove all unaligned residues from your target sequence.
Ben Webb, Modeller Caretaker
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modeller-care@salilab.org https://salilab.org/modeller/
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Ahmad Khalifa -
Modeller Caretaker