Can I get an alignment in fasta format between two proteins using modeller? Can I convert the pir or par format to fasta?
Regards.
On 8/25/18 9:52 AM, Ahmad Khalifa wrote: > Can I get an alignment in fasta format between two proteins using > modeller? Can I convert the pir or par format to fasta?
Sure, alignment.write() can write out in FASTA format. See https://salilab.org/modeller/9.20/manual/node293.html for an example.
Ben Webb, Modeller Caretaker