Tweaking around with the same alignment
Hello!
Sometimes I want to play with different Modeller options and parameters while working with the same alignment file. However, to avoid overwriting the previous results, I actually have to modify the alignment file and Modeller script anyway by changing the target sequence name. Am I doing something wrong and is there a better way?
Thank you in advance Eugene
On 12/19/19 3:55 PM, Eugene Radchenko wrote: > Sometimes I want to play with different Modeller options and parameters > while working with the same alignment file. > However, to avoid overwriting the previous results, I actually have to > modify the alignment file and Modeller script anyway by changing the > target sequence name. > Am I doing something wrong and is there a better way?
Right, this is the normal way that automodel names its output files. But you can change this by subclassing and overriding the get_model_filename() method: https://salilab.org/modeller/9.23/manual/node75.html
Ben Webb, Modeller Caretaker
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Eugene Radchenko -
Modeller Caretaker