On 6/6/14, 5:29 AM, Marco Galardini wrote: > thanks for your prompt reply: the problem is that the PSSM file should > be ok.
Looks OK. If you can send me the Modeller input file and whatever file it's trying to read (presumably the .pssm) then I can take a look and see if I can reproduce your problem here. (If you can cut down the .pssm to a smaller size and still reproduce the problem, that would help ;) - look for the // separators.)
Ben