17 May
2011
17 May
'11
1:51 p.m.
On 5/13/11 3:52 AM, Romain Studer wrote: > In the documentation: > "Hits (input sequence to template structure matches) with an E-value > better than a specified cut-off value are selected" > > I would like to know if we can tell Modpipe to select anotehr specific > E-value threshold, or a percentage of identity?
No, there is no such option when using main/ModPipe.pl. But you can run the individual steps in the pipeline (scripts in src/) and do whatever filtering you prefer between the steps. For example, after producing the hit file, you can pick the alignments you prefer from that file and run src/MakeModels.pl on each one.
Ben
--
ben@salilab.org http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle