Romain,

TSVMod is an external program, that is not included in Modeller. It is currently not publicly available. It is not just a script, but additionally uses large custom database files to calculate the score.

Did you use the option --score_by_tsvmod OFF

when starting ModPipe.pl?

Best regards, Ursula

On Wed, May 18, 2011 at 3:46 AM, Romain Studer romain.studer@unil.chwrote:

> Dear Modpipe developers, > > I cannot find the program TSVMod. > > In changelog: > "- Introduced flag to disable TSVMod calculation if needed > - TSVMod scores are incorporated into ModPipe. Scores will be > calculated for all structures. Additionally, when chosen as a gathering > option, models with a predicted no35>0.4 will be selected. " > > In the doc/modpipe.conf: > "# - TSVMod executables > TSVMODEXE > /netapp/sali/ModPipe/database/TSVMod/programs/main/score_tsvmod.pl" > > But I cannot find any "score_tsvmod.pl" in neither modpipe-2.2.0 nor > modeller-9.9. > > I tried to set it to OFF in my modpipe.conf: > # - TSVMod executables > TSVMODEXE OFF > > But it still printing warnings: > "MPLib::MPModules::GetModels__M> Number of alignments to process: 2 > MPLib::MPModules::GetModels__M> Number of models calculated: 1 > MPLib::MPModules::GetModels__M> Number of models calculated: 1 > PLLib::TSVModUtils::ExecTSVMod__E> Could not find TSVMod executable: > PLLib::TSVModUtils::ExecTSVMod__E> Could not find TSVMod executable: " > > > Where I can find the TSVMod program? > Or how I can set it to off to not use it? > > Thank you for your answer. > > Best regards, > Romain > > _______________________________________________ > ModPipe-users mailing list > ModPipe-users@salilab.org > https://salilab.org/mailman/listinfo/modpipe-users >