Next: Index
Up: MODELLER A Program for
Previous: TOP to Python correspondence
Contents
Index
- Braun & Gõ, 1985
-
Braun, W. & Gõ, N. (1985).
J. Mol. Biol. 186, 611-626.
- Brünger, 1992
-
Brünger, A. T. (1992).
X-PLOR Manual Version 3.1.
Yale University New Haven, Connecticut.
- Felsenstein, 1985
-
Felsenstein, J. (1985).
Evolution, 39, 783-791.
- Fiser et al., 2000
-
Fiser, A., Do, R. K. G., & Šali, A. (2000).
Protein Sci. 9, 1-21.
(Also available
online).
- Gallicchio & Levy, 2004
-
Gallicchio, E. & Levy, R. M. (2004).
J. Comp. Chem. 25, 479-499.
- Goldstein, 1980
-
Goldstein, H. (1980).
Classical Mechanics, 2nd edition.
Reading, Massachusetts: Addison-Wesley Publishing Company.
- Gotoh, 1982
-
Gotoh, O. (1982).
J. Mol. Biol. 162, 705-708.
- Hubbard & Blundell, 1987
-
Hubbard, T. J. P. & Blundell, T. L. (1987).
Protein Eng. 1, 159-171.
- IUPAC-IUB, 1970
-
IUPAC-IUB (1970).
Biochem. 9, 3471-3479.
- John & Šali, 2003
-
John, B. & Šali, A. (2003).
Nucl. Acids Res. 31, 3982-3992.
(Also available
online).
- Kabsch & Sander, 1983
-
Kabsch, W. & Sander, C. (1983).
Biopolymers, 22, 2577-2637.
- Karlin & Altschul, 1990
-
Karlin, S. & Altschul, S. F. (1990).
Proc. Natl. Acad. Sci. USA, 87, 2264-2268.
- Kendrew et al., 1970
-
Kendrew, J. C., Klyne, W., Lifson, S., Miyazawa, T., Némethy, G.,
Phillips, D. C., Ramachandran, G. N., & Scheraga, H. (1970).
J. Mol. Biol. 52, 1-17.
- Loncharich et al., 1992
-
Loncharich, R. J., Brooks, B. R., & Pastor, R. W. (1992).
Biopolymers, 32, 523-535.
- MacKerell et al., 1998
-
MacKerell, Jr., A. D., Bashford, D., Bellott, M., Dunbrack Jr., R. L.,
Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S.,
Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C.,
Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, III, W. E., Roux,
B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M.,
Wiorkiewicz-Kuczera, J., Yin, D., & Karplus, M. (1998).
J. Phys. Chem. B, 102, 3586-3616.
- Madhusudhan et al., 2006
-
Madhusudhan, M. S., Martí-Renom, M. A., Sanchez, R., & Šali, A.
(2006).
Prot. Eng. Des. & Sel. 19, 129-133.
(Also available
online).
- Madhusudhan et al., 2009
-
Madhusudhan, M. S., Webb, B. M., Martí-Renom, M. A., Eswar, N., &
Šali, A. (2009).
Prot. Eng. Des. & Sel. in press.
(Also available
online).
- Martí-Renom et al., 2004
-
Martí-Renom, M. A., Madhusudhan, M. S., & Šali, A. (2004).
Protein Sci. 13, 1071-1087.
(Also available
online).
- Melo & Feytmans, 1997
-
Melo, F. & Feytmans, E. (1997).
J. Mol. Biol. 267, 207-222.
- Melo et al., 2002
-
Melo, F., Sánchez, R., & Šali, A. (2002).
Protein Sci. 11, 430-448.
(Also available
online).
- Metropolis et al., 1953
-
Metropolis, N., Rosenbluth, A. W., Rosenbluth, M. N., Teller, A. H., & Teller,
E. (1953).
J. Chem. Phys. 21, 1087-1092.
- Needleman & Wunsch, 1970
-
Needleman, S. B. & Wunsch, C. D. (1970).
J. Mol. Biol. 48, 443-453.
- Nicholls et al., 1991
-
Nicholls, A., Sharp, K. A., & Honig, B. (1991).
Proteins, 11, 281-296.
- Pearson, 1998
-
Pearson, W. (1998).
J. Mol. Biol. 276, 71-84.
- Press et al., 1992
-
Press, W. H., Teukolsky, S. A., Vetterling, W. T., & Flannery, B. P. (1992).
Numerical Recipes, 2nd edition.
Cambridge: Cambridge University Press.
- Rapaport, 1997
-
Rapaport, D. C. (1997).
The Art of Molecular Dynamics Simulation.
Cambridge, UK: Cambridge University Press.
- Richards & Kundrot, 1988
-
Richards, F. M. & Kundrot, C. E. (1988).
Proteins, 3, 71-84.
- Richmond & Richards, 1978
-
Richmond, T. J. & Richards, F. M. (1978).
J. Mol. Biol. 119, 537-555.
- Šali & Blundell, 1990
-
Šali, A. & Blundell, T. L. (1990).
J. Mol. Biol. 212, 403-428.
(Also available
online).
- Šali & Blundell, 1993
-
Šali, A. & Blundell, T. L. (1993).
J. Mol. Biol. 234, 779-815.
(Also available
online).
- Šali & Overington, 1994
-
Šali, A. & Overington, J. (1994).
Protein Sci. 3, 1582-1596.
(Also available
online).
- Sankoff & Kruskal, 1983
-
Sankoff, D. & Kruskal, J. B. (1983).
Time warps, string edits, and macromolecules: The theory and
practice of sequence comparison.
Reading, MA: Addison-Wesley Publishing Company.
- Sellers, 1974
-
Sellers, P. H. (1974).
J. Comb. Theor. A16, 253-258.
- Shanno & Phua, 1980
-
Shanno, D. F. & Phua, K. H. (1980).
ACM Trans. Math. Soft. 6, 618-622.
- Shanno & Phua, 1982
-
Shanno, D. F. & Phua, K. H. (1982).
In: Collected algorithms from ACM. Trans. Math. Software
volume 2(1).
- Shen & Šali, 2006
-
Shen, M.-Y. & Šali, A. (2006).
Protein Sci. 15, 2507-2524.
(Also available
online).
- Smith & Waterman, 1981
-
Smith, T. F. & Waterman, M. S. (1981).
J. Mol. Biol. 147, 195-197.
- Subbiah et al., 1993
-
Subbiah, S., Laurents, D. V., & Levitt, M. (1993).
Curr. Biol. 3, 141-148.
- Sutcliffe et al., 1987
-
Sutcliffe, M. J., Haneef, I., Carney, D., & Blundell, T. L. (1987).
Protein Eng. 1, 377-384.
- Topf et al., 2005
-
Topf, M., Baker, M. L., John, B., Chiu, W., & Šali, A. (2005).
J. Struct. Biol. 149, 191-203.
(Also available
online).
- van Schaik et al., 1993
-
van Schaik, R. C., Berendsen, H. J., & Torda, A. E. (1993).
J. Mol. Biol. 234, 751-762.
- Verlet, 1967
-
Verlet, J. (1967).
Phys. Rev. 159, 98-103.
- Wu & Brooks, 2003
-
Wu, X. & Brooks, B. R. (2003).
Chem. Phys. Lett. 381, 512-518.
- Wu & Wang, 1999
-
Wu, X. & Wang, S. (1999).
J. Chem. Phys. 110, 9401-9410.
Automatic builds
2009-06-12