Links

Links to other resources and people using Modeller

(!) Please edit this page to link to your own resources or interfaces using Modeller, so that Modeller users can easily find them!

Graphical and web interfaces

MINT, a graphical interface to simple Modeller comparative modeling functions

EasyModeller, a windows based GUI (graphical user interface)  to Modeller developed using PerlTk

SWIFT MODELLER, a JAVA based GUI to MODELLER

Chimera has a Modeller interface in version 1.5 or later. A video tutorial is also available.

PyMod, a simple graphical interface between PyMOL and other tools like BLAST, ClustalW, Muscle, CEalign and MODELLER (Workflow Example Video).

Modelface, an interface to Modeller 9.10 and higher together with the ability of making single point mutaions, http://ssu.ac.ir/index.php?id=14448

Usage of Modeller in other systems

Friend, an integrated multiple structure visualization and multiple sequence alignment application (see "extended capabilities")

Structure SNP, which compares structural nsSNP distributions in many proteins or protein complexes, and allows mapping onto protein structures by comparative modeling with Modeller

M4T, Multiple Mapping Method with Multiple Templates: Comparative protein structure modeling by combining of multiple templates and optimizing sequence-to-structure alignments

MMM, Multiple Mapping Method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling

ArchPred, template based loop structure prediction server that delivers a full comparative model with the predicted loop using Modeller

Flex-EM, a method for protein structure fitting and refinement guided by cryoEM density.

Frameworks and other interfaces

Biskit, a modular, object-oriented Python library for structural bioinformatics research.