Links to other resources and people using Modeller
Please edit this page to link to your own resources or interfaces using Modeller, so that Modeller users can easily find them!
Graphical and web interfaces
MINT, a graphical interface to simple Modeller comparative modeling functions
SWIFT MODELLER, a JAVA based GUI to MODELLER
Modelface, an interface to Modeller 9.10 and higher, Capable of making single point mutaion in a PDB structure, password=yazdpharmacy
Structuropedia, a simple yet powerful and versatile web interface with capabilities for modeling and rendering of proteins alone and in complex with peptides and DNA. Powered by a wide array of engines including Biopython, Blast, Clustal, JSmol, Modeller, Refsense and VMD.
Usage of Modeller in other systems
Friend, an integrated multiple structure visualization and multiple sequence alignment application (see "extended capabilities")
Structure SNP, which compares structural nsSNP distributions in many proteins or protein complexes, and allows mapping onto protein structures by comparative modeling with Modeller
M4T, Multiple Mapping Method with Multiple Templates: Comparative protein structure modeling by combining of multiple templates and optimizing sequence-to-structure alignments
MMM, Multiple Mapping Method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling
ArchPred, template based loop structure prediction server that delivers a full comparative model with the predicted loop using Modeller
Flex-EM, a method for protein structure fitting and refinement guided by cryoEM density.
Frameworks and other interfaces
Biskit, a modular, object-oriented Python library for structural bioinformatics research.