Links

Links to other resources and people using Modeller

(!) Please edit this page to link to your own resources or interfaces using Modeller, so that Modeller users can easily find them!

Graphical and web interfaces

• MINT, a graphical interface to simple Modeller comparative modeling functions
• Chimera has a Modeller interface in version 1.5 or later. A video tutorial is also available.
• PyMod, a simple graphical interface between PyMOL and other tools like BLAST, ClustalW, Muscle, CEalign and MODELLER (Workflow Example Video).
• Structuropedia, a simple yet powerful and versatile web interface with capabilities for modeling and rendering of proteins alone and in complex with peptides and DNA. Powered by a wide array of engines including Biopython, Blast, Clustal, JSmol, Modeller, Refsense and VMD.

Usage of Modeller in other systems

• M4T, Multiple Mapping Method with Multiple Templates: Comparative protein structure modeling by combining of multiple templates and optimizing sequence-to-structure alignments
• MMM, Multiple Mapping Method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling
• ArchPred, template based loop structure prediction server that delivers a full comparative model with the predicted loop using Modeller
• Flex-EM, a method for protein structure fitting and refinement guided by cryoEM density.

Frameworks and other interfaces

• Biskit, a modular, object-oriented Python library for structural bioinformatics research.
• homelette, a unified and modular interface to homology modelling software.