| Name |
Description |
|
DBAli
|
Database of sequence and structure alignments
generated by different alignment methods
|
|
EVA
|
Server for continuous, automatic, and statistically
significant assessment of protein structure prediction servers
|
|
Flex-EM
|
A method for fitting and refining a component structure within its map at intermediate resolution |
|
IceDB
|
Integrated database for
New York Structural Genomics Research Consortium
|
|
Integral Membrane Database
|
Integral membrane database for 34 genomes.
|
|
LigBase
|
Database of structurally defined ligand binding sites in PDB
|
|
ModBase
|
Comprehensive database of annotated comparative protein
structure models
|
|
PiBase
|
Comprehensive database of structurally defined interfaces in proteins
|
|
MODELLER
|
Program for comparative protein structure modelling
by satisfaction of spatial restraints
|
|
Membrane Protein counts
|
Counts of membrane protein families represented in 34 genomes.
|
|
ModLoop
|
Server for modeling of loops in protein structures
|
|
ModView
|
Web plugin for visualization and analysis of multiple
protein sequences and structures
|
|
ModWeb
|
Server for automated comparative protein structure modeling
|
|
ALBASE-3
|
Database of multiple protein structure alignments used
to derive MODELLER restraints
|
|
ASGL
|
Program for preparing simple PostScript plots
|
|
Models in our publications
|
Links to models in our publications
|
|
pG server
|
Program for model assessment based on the ProsaII Z-score
|
|
Miscellaneous programs
|
PSA (surface accessibility), ELLIPSOID (antigenicity index)
|
|
Patcher
|
Program for localizing binding sites in protein structures based on a patch optimization scheme and a composite scoring function
|
|
Structural decoys
|
Series of structural decoys used in the Sali Lab.
Includes the MOULDER, MODPIPE and MODEM sets.
|
