Our Resources
| ALBASE-3 | Database of multiple protein structure alignments used to derive MODELLER restraints |
| ASGL | Program for preparing simple PostScript plots |
| DBAli | Database of sequence and structure alignments generated by different alignment methods |
| EVA | Server for continuous, automatic, and statistically significant assessment of protein structure prediction servers |
| Flex-EM | A method for fitting and refining a component structure within its map at intermediate resolution |
| IceDB | Integrated database for New York Structural GenomiX Research Consortium |
| Integral Membrane Database |
Integral membrane database for 34 genomes. |
| LigBase | Database of structurally defined ligand binding sites in PDB |
| Membrane Protein counts |
Counts of membrane protein families represented in 34 genomes. |
| Miscellaneous programs | PSA (surface accessibility), ELLIPSOID (antigenicity index) |
| ModBase | Comprehensive database of annotated comparative protein structure models |
| MODELLER | Program for comparative protein structure modelling by satisfaction of spatial restraints |
| Models in our publications |
Links to models in our publications |
| ModLoop | Server for modeling of loops in protein structures |
| ModView | Web plugin for visualization and analysis of multiple protein sequences and structures |
| ModWeb | Server for automated comparative protein structure modeling |
| Patcher | Program for localizing binding sites in protein structures based on a patch optimization scheme and a composite scoring function |
| PiBase | Comprehensive database of structurally defined interfaces in proteins |
| Structural decoys | Series of structural decoys used in the Sali Lab. Includes the MOULDER, MODPIPE and MODEM sets. |
Andrej Sali, PhD,
Professor, Department of Bioengineering and Therapeutic Sciences;
Director, California Intitute for Quantitative Biosciences at UCSF;
Department of Pharmaceutical Chemistry; University of California at San Francisco, UCSF MC 2552,
Mission Bay, Byers Hall,
1700 4th Street, Suite 503B,
San Francisco, CA 94158-2330,
Tel +1 (415) 514-4227,
Fax +1 (415) 514-4231, 4234,
,
Web http://www.salilab.org,
Assistant: Ms. Hilary Mahon,
Email: ,
Tel +1 (415) 514-4228,
Lab +1 (415) 514-4258, 4233