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Is there a problem with automatic disulfides in Modeller 6?  My recent
models are being produced without the disulfides present in the templates
and I don't remember this being a problem with earlier versions.  In the
log file there is a call to the relevant patch routine

TOP_________>   151  465 PATCH_SS_TEMPLATES

but it doesn't seem to work.  The template files have been processed so
that they have lost PDB headers but I assume MODELLER figures SS bonds for
itself rather than reading SSBOND lines in PDB headers...

We can always define the disulfides manually with the general PATCH
command but, as the manual says, they'll be better defined by
PATCH_SS_TEMPLATES - generated restraints.

Thanks for your help.


|                       Dr Daniel John Rigden                             |
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