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Non-bonded clashes

Dear Modellers

I'm trying to refine a model using MODELLER-6, using a basic top script
and thorough MD/SA refinement, but I keep getting som unwelcome
non-bonded clashes. Does anyone have any idea as to how I can remove
them using MODELLER?

Thanks in Advance,

Derek Smith

-- 
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Dr. Derek Smith, Structural Biology Laboratory, Department of Chemistry,
University of York, Heslington, York. YO10 5DD, United Kingdom.
phone: (01904) 434532 fax: (01904) 410519 email: 
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