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Re: Modelling Heme



please follow instructions from FAQ (Freq. Asked  Questions) point 16,
Modeller manual

http://salilab.org/modeller/manual/node29.html

good luck 
Andras


Christoph Nimptsch wrote:
> 
> Dear Modellers,
> 
> I am trying to model a protein containing a heme group.
> There is a residue type called heme in top_heav.lib, but I don`t know how to
> utilize it.
> I am aware of changing my alignment to include HETATMs but I haven`t
> succeeded yet.
> 
> Do I have to change the pdb-templates to include the heme residue? How can I
> make it clear that MODELLER 6v1 should use it?
> 
> Is it possible to receive the model with the heme group in it?
> 
> Thanks for any suggestions,
> 
> Christoph Nimptsch