please follow instructions from FAQ (Freq. Asked Questions) point 16,
Modeller manual
http://salilab.org/modeller/manual/node29.html
good luck
Andras
Christoph Nimptsch wrote:
>
> Dear Modellers,
>
> I am trying to model a protein containing a heme group.
> There is a residue type called heme in top_heav.lib, but I don`t know how to
> utilize it.
> I am aware of changing my alignment to include HETATMs but I haven`t
> succeeded yet.
>
> Do I have to change the pdb-templates to include the heme residue? How can I
> make it clear that MODELLER 6v1 should use it?
>
> Is it possible to receive the model with the heme group in it?
>
> Thanks for any suggestions,
>
> Christoph Nimptsch