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How to model DNA binding protein



How can I include the DNA structure when modelling a DNA binding protein?

Can I just include the HETATM atoms using 

SET MODEL_TOPOLOGY = 1, HETATM_IO = on

This doesn't seem to work, what else to need to include?


Michael Buck





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Michael Buck
NCSU Genetics

Phone  (919)515-5759
Fax 	   (919)515-3355	
http://www4.ncsu.edu/~mjbuck
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