I had a similar problem running on a linux box.
>1. When I try 'mod model-default'I get 'bash: mod: command not found'
I have the same error. Try just 'mod6v1 topfile'.
>2. When I try '/usr/local/bin/modeller6v1/bin/mod6v1 model-default'I get
>'STOP'
This worked check your log file 'model-default.log'
I have been running it by 'mod6v1 topfile' and it seems to work fine.
>3. When I try '/usr/local/bin/modeller6v1/bin/mod6v1_i386-absoft
>model-default'
Make sure 'model-defualt' is in the local directory that your running it from.
I hope this helped.
Michael Buck
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Michael Buck
NCSU Genetics
Phone (919)515-5759
Fax (919)515-3355
http://www4.ncsu.edu/~mjbuck
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