Hi,
It looks like you :
1. didn't installed MODELLER correctly
2. didn't source .cshrc after installation
Please, email me a copy of your .cshrc and all input files.
Thanks,
Bozidar
PS. I implore everybody to email all the questions to the modeller_usage
list first, because some other people might have the same problems and
they could help or learn how to solve similar problems when they encounter
them ;-)
On Sat, 27 Apr 2002, [ISO-2022-JP] 矢野 雅裕 wrote:
> I have vety basic questions about modeller6v0.
> I have installed it in my PC(Linux RedHat 7).
>
> I tried to run modeller according to manual(Tutorial on using MODELLER for
> comparative modeling).
> I can make sure Atom file,Alignment file, Script file and so on.
>
> There is a sample script file model-default.top as follows
> (examples/tutorial-model/model-default.top).
>
> # Homology modelling by the MODELLER TOP routine 'model'.
>
> INCLUDE # Include the
> predefined TOP routines
>
> SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file
> SET ALNFILE = 'alignment.ali' # alignment filename
> SET KNOWNS = '5fd1' # codes of the templates
> SET SEQUENCE = '1fdx' # code of the target
> SET ATOM_FILES_DIRECTORY = './:../atom_files' # directories for input atom
> files
> SET STARTING_MODEL= 1 # index of the first model
> SET ENDING_MODEL = 1 # index of the last model
> # (determines how
> many models to calculate)
>
> CALL ROUTINE = 'model' # do homology modelling
>
>
>
> According to manual
>
> "To run MODELLER with the script file model-default.top, execute the
> following command:
>
> mod model-default"
>
> So I tried to input mod model-default as follows.
>
> [root@fox08.tutorial-model] # mod model-default
>
> But,the answer is no directory.
>
> I can't run modeller .I tried other command too.
>
> Maybe, I don't understand very basci method.
>
> What should I do to run modeller?
>
>