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Re: Bad template?--log ali. and top files.



log file:
#######################################


                         MODELLER 6v1, 17 Jan 2002

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS


                     Copyright(c) 1989-2002 Andrej Sali
                            All Rights Reserved

                            Written by A. Sali
          with help from A. Fiser, R. Sanchez, M.A. Marti-Renom,
                   B. Jerkovic, A. Badretdinov, F. Melo,
                       J.P. Overington & E. Feyfant
                   Rockefeller University, New York, USA
                     Harvard University, Cambridge, USA
                 Imperial Cancer Research Fund, London, UK
             Birkbeck College, University of London, London, UK


Kind, OS, HostName, Kernel, Processor: 4, Linux master.cl.mssm.edu
2.4.9-13smp i686
Date and time of compilation         : 01/24/2002 16:28:15
Job starting time (YY/MM/DD HH:MM:SS): 2002/05/02  11:04:08.230

getprog_531W> ROUTINE redefined:  getnames

check_ali___> Checking the sequence-structure alignment.

Implied target CA(i)-CA(i+1) distances longer than  8.0 angstroms:

ALN_POS  TMPL  RID1  RID2  NAM1  NAM2     DIST
----------------------------------------------
END OF TABLE

############################################


Top file:
*********************************
INCLUDE
SET ATOM_FILES_DIRECTORY = './'
SET ALNFILE = '1gh0B-3-1eyxK.ali'
SET KNOWNS = '1eyxK'
SET SEQUENCE = '1gh0B'
SET STARTING_MODEL = 1
SET ENDING_MODEL = 5
CALL ROUTINE = 'model'
SUBROUTINE ROUTINE = 'getnames'
STRING_IF STRING_ARGUMENTS = MODEL 'undefined', OPERATION = 'EQ', THEN =
;
'STRING_OPERATE OPERATION = CONCATENATE, STRING_ARGUMENTS =
1gh0B-3-1eyxK .ini, RESULT = MODEL'
STRING_IF STRING_ARGUMENTS = CSRFILE 'undefined', OPERATION = 'EQ', THEN
= ;
'STRING_OPERATE OPERATION = CONCATENATE, STRING_ARGUMENTS =
1gh0B-3-1eyxK .rsr,  RESULT = CSRFILE'
STRING_OPERATE OPERATION = 'CONCATENATE', ;
STRING_ARGUMENTS = '1gh0B-3-1eyxK' '.sch',  RESULT = SCHFILE
STRING_OPERATE OPERATION = 'CONCATENATE', ;
STRING_ARGUMENTS = '1gh0B-3-1eyxK' '.mat',  RESULT = MATRIX_FILE
SET ROOT_NAME = '1gh0B-3-1eyxK'
RETURN
END_SUBROUTINE
*************************************

>P1;1gh0B
structureX:1gh0B:   1 :B: 172 :B:undefined:undefined:-1.00:-1.00
MFDAFTKVVSQADTRGEMLSTAQIDALSQMVAESNKRLDVVNRITSNASTIVSNAARSLFAEQPQLIAPGG-AYT
SRRMAACLRDMEIILRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGSSVAVGVGKMKEAALA---IVNDPAG
ITPGDCSALASEIAGYFDRAAAAVS*
>P1;1eyxK
structureX:1eyxK:   1 : : 164 : :undefined:undefined:-1.00:-1.00
MKSVITTVISAADSAGRFPSSSDLESVQGNIQRASARLEAAEKLASNHEAVVKEAGDACFGKYGYLKNPGEAGEN
QEKINKCYRDIDHYMRLVNYSLVIGGTGPLDEWGIAGAREVYRTLNLPTSAYIAAFAFTRDR-LCGPRDMS----
-----AQ-AGVEYSTALDYIINSLS*
--- Begin Message ---
Dear Modellers,
I'm trying to build models with 1eyxK as template, and always fails.

The error message I get:
MODELLER stopped with message : /usr/local/bio/modeller6v1/bin/mod6v1:
line 41: 32686 Segmentation fault
     $NICE ${EXECUTABLE} $STEERF >$LOGF

***************************************
What kind of error could this be? Are there any reason that 1eyxK is a
bad template to use?

Any input is appreciated,

Lei

--- End Message ---