I have just started modelling a G Protein-Coupled Receptor,
which has a number of post translational modifications. My
problem is that my template, Rhodopsin, is glycosylated on the
extracellular loops at a different position to my target sequence.
Is there a way of adding the glycosylation to my target protein
either at the alignment stage or before the model in refined.
As always many thanks in advance.