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Modelling post trans mods

Hi All, 
I have just started modelling a G Protein-Coupled Receptor, 
which has a number of post translational modifications. My 
problem is that my template, Rhodopsin, is glycosylated on the 
extracellular loops at a different position to my target sequence. 
Is there a way of adding the glycosylation to my target protein 
either at the alignment stage or before the model in refined. 
As always many thanks in advance.