Hi,
I have two questions and will be thankfull if any of you knows how to
solve the following questions.
1.
When modeller runs on a moltiple alignment it sometimes does not generate
a model and gives the error :
Increase MAXSPL to at least 630
ERROR_STATUS >= STOP_ON_ERROR: 1 1
If i understand correctly this error occurs because the models that are
imposed by the given alignments are not superimposable. This probably
happens because of some fragment/s in one or more of the alignmnets. I
prefer not to model that part at all than to increase the value of MAXPL.
Is there any way i can deduce from the log file which a.a's i sould delete
so that this error will not occur ?
2.
I sometimes get the error
STDEV < 0
What causes the standart deviation to be smaller than zero ?
How can i correct such an error? that is , how can i know what parts of
the alignmnet i sould remove , or anything else ?
Thanks alot!
Iris.