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Modeller input alignment file



Hello everybody,

I am doing a project on comparative modelling, by using
modeller. My problem  is the following:

I am trying to make an input file with PDB structures aligned
in PIR format.
However, when I am reading the modeller manual, I see that the worked
example is in the form:

P1;2ald
structureX:2ald:2:@:363:@:aldolase:human muscle:2.00:0.17
*

If you go to the section "display/download file", in the PDB
website, you  will get the usual big file.
But when I have a look at this file, I see that ATOM has
three coordinates:
-20.521   45.890  70.464

How from these coordinates I get the :2:@:363:@:  ???
Is there a formula that transforms it?

I would be grateful if you could give me a hint on this.

Thanks,

Christos Kouriniadis

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