unusual AAs

["John T. Penniston" <>]

Not an easy way! I made the molecule in HyperChem and measured the angles
and bond lengths; sometimes I guessed

Eliah Aronoff-Spencer wrote:

Hi all, I need add a library file for a non-canonical amino acid, but right now I don't have access to quanta.  The bonds/angles/impropers I can add by hand but I was wondering if anyone knew of any easy way to generate internal coordinates? Or an alternative route to creating a charm library file.

Cheers and Thanks,

Eli Spencer

----- Original Message -----

From: " href="mailto:">John T. Penniston

To: " href="mailto:">

Sent: Friday, July 25, 2003 8:31 AM

Subject: Re: upper residue number modeling limit?

I've used it to model a protein of 1200 residues; it just takes longer.
John P.

Timothy Minh wrote:

Hello Modeller users,

I was wondering if there was a limit in the amount of residues that MODELLER 6v2 can take.  I have been able to model proteins approx 250 in length, but I've not been able to model larger proteins of approx 1300 residues.  I would appreciate any suggestions/comments that you may have.

Thank you!
Tim Minh

-- 

John T. Penniston, Ph.D.
Dept. of Biochemistry and Molecular Biology
Guggenheim 16, Mayo Clinic
200 First St. SW
Rochester, MN 55905 USA

    

-- 

John T. Penniston, Ph.D.
Dept. of Biochemistry and Molecular Biology
Guggenheim 16, Mayo Clinic
200 First St. SW
Rochester, MN 55905 USA