RE: [modeller_usage] fix ligand atom positions during modelling
To: <>, <>
Subject: RE: [modeller_usage] fix ligand atom positions during modelling
From: "Eswar Narayanan" <>
Date: Fri, 14 Nov 2003 12:22:10 -0800
Peter,
Using a "." (dot) at the end of the alignment ensures that the ligand (or
any un-recognized het atoms are included in the model. Please look at the
manual for residue type specifications.
Eswar.
---
Eswar Narayanan, Ph.D
Mission Bay Genentech Hall
600 16th Street, Suite N474Q
University of California, San Francisco
San Francisco, CA 94143-2240 (CA 94158 for courier)
Tel +1 (415) 514-4233; Fax +1 (415) 514-4231
http://www.salilab.org/~eashwar
-----Original Message-----
From:
[">mailto:] On Behalf Of Peter Haebel
Sent: Friday, November 14, 2003 4:46 AM
To:
Subject: [modeller_usage] fix ligand atom positions during modelling
Hi there,
i would like to build a homology model of a protein-ligand complex. how can
I
fix the position of my ligand?
kind regards,
peter
--
___________________________________________
Dr. Peter Haebel
Philipps-Universität Marburg
Institut für Pharmazeutische Chemie
Marbacher Weg 6
D-35032 Marburg
phone: +49-6421-28-25072
fax: +49-6421-28-28994
email:
http://www.agklebe.de
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