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RE: [modeller_usage] fix ligand atom positions during modelling



Peter,

Using a "." (dot) at the end of the alignment ensures that the ligand (or
any un-recognized het atoms are included in the model. Please look at the
manual for residue type specifications.

Eswar.

---
Eswar Narayanan, Ph.D
Mission Bay Genentech Hall
600 16th Street, Suite N474Q
University of California, San Francisco
San Francisco, CA 94143-2240 (CA 94158 for courier)
Tel +1 (415) 514-4233; Fax +1 (415) 514-4231
http://www.salilab.org/~eashwar

-----Original Message-----
From: 
[">mailto:] On Behalf Of Peter Haebel
Sent: Friday, November 14, 2003 4:46 AM
To: 
Subject: [modeller_usage] fix ligand atom positions during modelling

Hi there,

i would like to build a homology model of a protein-ligand complex. how can
I 
fix the position of my ligand?

kind regards,

peter

-- 
 ___________________________________________

Dr. Peter Haebel

Philipps-Universität Marburg
Institut für Pharmazeutische Chemie
Marbacher Weg 6
D-35032 Marburg

phone: +49-6421-28-25072
fax: +49-6421-28-28994

email: 
http://www.agklebe.de


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