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[modeller_usage] Number problem



Dear sir,

I am trying to model a allosteric protein, my problem
is that the number of residues in alignment file(with
template and target sequence) and pdb file is
different b'cos in PDB file there is a gap in the
atoms and HETATM.

So modeller is giving error at check alignment, and
giving no. of residues in alignment and pdb file are
different.

Can you please give me any suggestion or advice how to
sort this problem

with regards
Hemant 

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