Re: [modeller_usage] Number problem

[Oliver Hucke <>]

Hi Hemant,

your problem might be solved by replacing all residues in the alignment 
that are not present in the pdb file with '-', i.e. with the character 
indicating a gap.

Hope this helps,

Oliver

hemant kushwaha wrote:
> Dear sir,
>
> I am trying to model a allosteric protein, my problem
> is that the number of residues in alignment file(with
> template and target sequence) and pdb file is
> different b'cos in PDB file there is a gap in the
> atoms and HETATM.
>
> So modeller is giving error at check alignment, and
> giving no. of residues in alignment and pdb file are
> different.
>
> Can you please give me any suggestion or advice how to
> sort this problem
>
> with regards
> Hemant 
>
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