Subject: Re: [modeller_usage] help on using modeller
From: Modeller Caretaker <>
Date: Mon, 3 May 2004 14:00:08 -0700
Cc:
On Mon, May 03, 2004 at 04:18:52PM +0100, rathan kar wrote:
> this time iam getting a different error
>
> and it says
>
> # Code #_Res #_Segm PDB_code Name
> -------------------------------------------------------------------------------
> 1 1hm9 182 1 1hm9 glmu
> 2 query 165 1 query unknown
> TOP_________> 121 107 CHECK_ALIGNMENT
>
> check_a_343_> >> BEGINNING OF COMMAND
> pdbnam__217W> Filename for PDB code not found: 1hm9
> Directories: c:/mod6v2/bin/1hm9.atm
> Extensions : :.atm:.pdb:.ent:.crd
Given that your alignment specifies 'structureX' for 1hm9, you need to
give Modeller a PDB file with the structure in. This needs to be in a
file called something like 1hm9.pdb or pdb1hm9.ent.
Ben Webb, Modeller Caretaker
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