Re: [modeller_usage] help on using modeller

this time iam getting a different error

and it says

# Code        #_Res #_Segm PDB_code    Name
-------------------------------------------------------------------------------
1       1hm9     182      1        1hm9 glmu
2      query     165      1       query unknown
TOP_________>   121 107 CHECK_ALIGNMENT

check_a_343_> >> BEGINNING OF COMMAND
pdbnam__217W> Filename for PDB code not found: 1hm9
              Directories: c:/mod6v2/bin/1hm9.atm
              Extensions :   :.atm:.pdb:.ent:.crd
rdabrk__288W> Protein not accepted:        1
check_a_337E> Structure not read in:        1
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

Dynamically allocated memory at          finish [B,kB,MB]:      4967329    4850.
907     4.737
Starting time                                            : 2004/05/03 20:31:36.
970
Closing time                                             : 2004/05/03 20:31:42.
960
Total CPU time [seconds]                                 :       5.99

here is the sequence alignment file

>P1;query
sequence:query:1 ::165::unknown:archeae::
SLKVIILAGGRGKRIT--LFKPFLVVCGKPLISWAFDAVNKL-SDKVYTVVGHKAELVEEVLAGQTE
IFPTPDISYENDVKYVV------ESLGPPILVLPVDIAFINNNIINNLIERCA--------VDMCTL
KSYGSYLGVTYWTGLNFSNYTDIEVK-----EKL-YNINTWEDYIKANKECNIL*
>P1;1hm9
structureX:1hm9:2::183::glmu:human::
SNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTE
-FVTQSEQLGTG-HAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD
NPF-GYGRIVRND--NAEVLRIVEQKDATDFEKQIKEINTGT-YVFDNERLFEA*

and the top file is

INCLUDE # Include the predefined TOP routines

SET OUTPUT_CONTROL = 1 1 1 1 1      # uncomment to produce a large log file
SET ALNFILE = 'alignmentfile.ali'      # alignment filename
SET KNOWNS   = '1hm9'               # codes of the templates
SET SEQUENCE = 'query'               # code of the target
SET ATOM_FILES_DIRECTORY = 'c:/mod6v2/bin/1hm9.atm' # directories for input atom files
SET STARTING_MODEL= 1               # index of the first model
SET ENDING_MODEL = 1               # index of the last model
                                   # (determines how many models to calculate)
CALL ROUTINE = 'model'              # do homology modelling

are there any books on learning modeller apartfrom the usual manual

with regards

N.RATHAN KAR