[modeller_usage] Error: Array too small. Increase MAXBND
To:
Subject: [modeller_usage] Error: Array too small. Increase MAXBND
From: K S Doctor <>
Date: Fri, 16 Jul 2004 18:26:21 -0700
How do I deal with the following error:
getf____223E> Array too small. Increase MAXBND
current maximum, current need: 6180 6181
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
I am running a 479 AA protein + a HETATM (NAG or "1") which is described
in /modlib/restyp.lib
I have had no problem running the dimer 479 AA * 2 , but without the
HETATM.
I am attaching the top file and representative ali, the PDB is the
public one.
Simply setting SET MAXBND = 6181 in the TOP file did not work (error)
thanks,
Kutbuddin
@ The Burnham Institute - SD, CA
# default model
INCLUDE # Include the predefined TOP routines
SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file
SET ALNFILE = 'monomer_v4.ali' # alignment filename
SET KNOWNS = '1EW2_A' # codes of the templates
SET SEQUENCE = '1ew2_delta' # code of the target
SET ATOM_FILES_DIRECTORY = './:../atom_files' # directories for input atom files
SET STARTING_MODEL= 1 # index of the first model
SET ENDING_MODEL = 1 # index of the last model
# (determines how many models to calculate)
SET HETATM_IO = on #
SET WATER_IO = off #
;SET MAXBND = 6181 # based on output log need
CALL ROUTINE = 'model' # do homology modelling