Hello all,
i also tried to run my skript to create a multiple alignment.
top-file:
READ_MODEL FILE = '1HYZ.pdb', MODEL_SEGMENT 'FIRST:A''LAST:A'
SEQUENCE_TO_ALI ALIGN_CODES = '1HYZ'
READ_MODEL FILE = '1BIS.pdb', MODEL_SEGMENT 'FIRST:B''LAST:B'
SEQUENCE_TO_ALI ALIGN_CODES = '1BIS',ADD_SEQUENCE = on
READ_MODEL FILE = '1BIU.pdb', MODEL_SEGMENT 'FIRST:B''LAST:B'
SEQUENCE_TO_ALI ALIGN_CODES = '1BIU',ADD_SEQUENCE = on
SET ATOM_FILES = '1HYZ' '1BIS' '1BIU'
MALIGN3D
SET ADD_SEQUENCE = on, ALIGN_BLOCK = NUMB_OF_SEQUENCES
READ_ALIGNMENT FILE = 'target.ali', ALIGN_CODES = ALIGN_CODES 'target',
ADD_SEQUENCE = on
ALIGN2D
WRITE_ALIGNMENT FILE='target.ali', ALIGNMENT_FORMAT = 'PIR'
WRITE_ALIGNMENT FILE='target.pap', ALIGNMENT_FORMAT = 'PAP'
But my job don't terminate....
it always made the same log file
log-file:
Job starting time (YY/MM/DD HH:MM:SS): 2005/01/13 14:15:56.678
rdactio_534E> Command not recognized:
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 56755
55.425 0.054
Starting time : 2005/01/14
14:15:56.678
Closing time : 2005/01/14
14:15:57.612
Total CPU time [seconds] : 0.90
Please can anybody help me....