[modeller_usage] problems running scripts under mod7v7

[Edoardo Saccenti <>]

I have the following script and alignment files and these 
work fine under mod6v2:

TOP FILE:
                                                                                
INCLUDE                              # Include the predefined TOP routines      
                                                                                
SET OUTPUT_CONTROL = 1 1 1 1 1                                                  
SET ALNFILE  = 'TYMS_G157V.aln'    # alignment filename                         
SET KNOWNS   = '1HW3'
SET SEQUENCE  = 'TYMS_G157V'
SET HETATM_IO = on                                                              
SET HYDROGEN_IO = on                                                            
SET ATOM_FILES_DIRECTORY = './'     # directories for input atom files          
SET STARTING_MODEL= 1                # index of the first model                 
SET ENDING_MODEL  = 1               # index of the last model                  
                                     # (determines how many models to 
calculate)
                                                                                
CALL ROUTINE = 'model'               # do homology modelling                    

ALIGN FILE:
>P1;1HW3
structureX:1HW3:26  :A:310:A :TYMS:Homo Sapiens:-1.00:-1.00
PPHGELQYLGQIQHILR-GVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVL
EELLWFIKGSTNAKELSSKGV----------------------GDLGPVYGFQWRHFGAE
YRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIM-AWNPRDLPLMALPP-HAL-QFYVVN
SELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL
KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKME
*
>P1;TYMS_G157V
sequence:TYMS_G157V:     : :     : :::-1.00:-1.00
PPHGELQYLGQIQHILR-GVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVL
EELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAE
YRDMESDYSGQVVDQLQRVIDTIKTNPDDRRIIM-AWNPRDLPLMALPP-HAL-QFYVVN
SELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL
KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKME
*

Running the same files under version mod7v7 the program stops withe following 
LOG file:
rdactio_534E> Command not recognized:  
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

There is some differnece between input files for 6 and 7 versions?

Thanks 
edoardo

-- 
"Raffiniert ist der Herr Gott,
 aber boshaft ist Er nicht."

---
Dr. Edoardo Saccenti
FiorGen Pharmacogenomics Foundation
CERM Nuclear Magnetic Resonace Research Center
Scientific Pole - University of Florence
Via Luigi Sacconi n° 6
50019 Sesto Fiorentino (FI)
tel: +39 055 4574193
fax: +39 055 4574253

www.cerm.unifi.it