|
Dear Modellers,
I've faced an error with same error
message that I met before.
I can't figure out the error in my input
files.
.ali file is generated by THREADER (by D.T. Jones).
.ali,
.top and log file are described below.
Any help or comment will be much
appreciated.
Thank you.
Ali
file
>P1;1ajs
structureX:p1ajs:1:A:412:A:PDB::0.00:0.00
--APPSVFA-E-VPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRT-DDCQPWVLPVVRKVEQRIANNSSL-------NHEYLPILGLAEFRTCASRLALG-DDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA-PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGF--ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK----TPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKIQ*
>P1;SEQ
sequence::::::SEQ::0.00:0.00
MFKSMIMAPPDPILGLSKI--------YHSDTKKNKINLGIGVYIEKFHAAPILE-SVKQAEDLLLKKEISKNYLAIEGSNDFNNANQ--------TLLFGPNDS-IISKNRIRTVQAPGGTGALRIAAECIAKYDNTINKKRRI-WISEPSWVNHKNIFFAAGLEVCTYPYYQKSTHS-IEFDKLIDTFNNIVKPGDIVLLHGCCHNPTGMDPTIEQWKMLSECAEKNRWIPLFDLAYQGFDNGLQE---DLIGLHMFCKNNPELIVCNSYSKNFGLYNERVGACTIITENNNHADCVLSQLRATIRAIYSNPPAHGAAIVSTILQNKTLRFIWEKELKNMRDHIKNMRKLLFNTLNKYKNSKVINQDFSFINNQKGMFAYIGLNSNQVIKLREELGIYLVDSGRLNLAGLSHKNIDYICNAICNLYI---*
Top file
INCLUDE
SET OUTPUT_CONTROL = 1 1 1 1 1
SET
ALNFILE = 'model.ali'
SET KNOWNS = '../pdb/pdb1ajs.ent'
SET SEQUENCE =
'SEQ'
SET STARTING_MODEL = 1
SET ENDING_MODEL = 1
SET HETATM_IO =
off
SET WATER_IO = off
SET LOOP_MD_LEVEL = 'refine_1'
SET MD_LEVEL =
'refine_1'
CALL ROUTINE = 'model'
log file
Dynamically allocated memory
at amaxseq
[B,kB,MB]: 2205269
2153.583 2.103
openf5__224_>
Open 11 OLD SEQUENTIAL
model.ali
Dynamically allocated memory
at amaxbnd
[B,kB,MB]: 8512161
8312.657 8.118
openf5__224_>
Open 11 OLD SEQUENTIAL
model.ali
read_al_375E> Unknown residue
type,position,sequence:
1 1
recover____E> ERROR_STATUS
>= STOP_ON_ERROR:
1 1
Dynamically allocated memory
at finish
[B,kB,MB]: 8512161
8312.657 8.118
Starting
time
: 2005/03/10 22:34:12.278
Closing
time
: 2005/03/10 22:34:13.182
Total CPU time
[seconds]
: 0.87
Joo-Hyun Seo,
Molecular Biotechnology & Biomaterials Lab.,
School of Chemical Engineering,
Seoul National University
Tel)+82 2 880 7528
Fax)+82 2 874 1206
E-mail) ">, ">
|