I am trying to use several templates for homology modelleing but some
present half-occupancy for some residus of my structures. As soon as I
try to modelise my sequence, I get the "structure not read in" message.
Is this linked to the occupancy ?
I did try the same scripts with a structure which does not present any
occupancy uncertainty and it works fine.
This shouldn't be a problem - Modeller largely ignores the occupancy
information anyway. If your problem persists, send me your input files
and I'll take a look.